PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_24634-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 206aa    MW: 22758 Da    PI: 8.2962
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_24634-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.8e-163579147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT eE+e++++a + +G + Wk+I + +  ++t  q++s+ qk+
  TRIUR3_24634-P1 35 RERWTDEEHERFLHALHIFGRD-WKSIEALVA-TKTSVQIRSHAQKH 79
                     78******************77.*********.************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.19E-172985IPR009057Homeodomain-like
PROSITE profilePS5129418.5223084IPR017930Myb domain
SMARTSM007174.5E-113482IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.0E-153482IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.5E-83579IPR009057Homeodomain-like
PfamPF002491.1E-123579IPR001005SANT/Myb domain
CDDcd001677.30E-103780No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MATMVRGVRM PAAARSSAAG RNKKLRKPYT ITRPRERWTD EEHERFLHAL HIFGRDWKSI  60
EALVATKTSV QIRSHAQKHF LKAQKLGLGA CLPPPLHPRR GAALGQQPPA HPDADMLVPS  120
MDWACAAPES RWPDLDAPGA EEWPSAGALH LQDETVELPL SPHDLRFALV YRFVGDVFAS  180
DAAVPVDAQL HRLQLQGVDP VVVDTG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3595770.0AK359577.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1099F17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566512.22e-79PREDICTED: protein REVEILLE 6-like
TrEMBLM8A2G61e-149M8A2G6_TRIUA; Transcription factor ASG4
STRINGMLOC_5590.31e-120(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36423170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.18e-35MYB_related family protein